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Namespaces

AppBundle
MinitoolsBundle

Classes

fasta
gff
Reader

Functions

ACGT_content()

ACGT_content(  $seq) 

Parameters

$seq

centi_to_fahren()

centi_to_fahren(  $centigrade) 

Parameters

$centigrade

Complement()

Complement(  $seq) 

Parameters

$seq

Count_ACGT()

Count_ACGT(  $seq) 

Parameters

$seq

Count_YRWSKMDVHB()

Count_YRWSKMDVHB(  $c) 

Parameters

$c

Display_both_strands()

Display_both_strands(  $seq) 

Parameters

$seq

DNA_is_palindrome()

DNA_is_palindrome(  $seq) 

Parameters

$seq

endonuclease_vendors()

endonuclease_vendors() 

extract_sequences()

extract_sequences(  $text) 

Parameters

$text

farhen_to_centi()

farhen_to_centi(  $fahren) 

Parameters

$fahren

find_microsatellite_repeats()

find_microsatellite_repeats(  $sequence,   $min_length,   $max_length,   $min_repeats,   $min_length_of_MR,   $mismatches_allowed) 

Parameters

$sequence
$min_length
$max_length
$min_repeats
$min_length_of_MR
$mismatches_allowed

find_oligos()

find_oligos(  $sequence,   $oligo_len) 

Parameters

$sequence
$oligo_len

find_palindromic_seqs()

find_palindromic_seqs(  $seq,   $min,   $max) 

Parameters

$seq
$min
$max

GC_content()

GC_content(  $seq) 

Parameters

$seq

get_array_of_Type_II_endonucleases()

get_array_of_Type_II_endonucleases() 

get_array_of_Type_IIb_endonucleases()

get_array_of_Type_IIb_endonucleases() 

get_array_of_Type_IIs_endonucleases()

get_array_of_Type_IIs_endonucleases() 

includeN_1()

includeN_1(  $primer,   $minus) 

Parameters

$primer
$minus

includeN_2()

includeN_2(  $primer,   $minus) 

Parameters

$primer
$minus

includeN_3()

includeN_3(  $primer,   $minus) 

Parameters

$primer
$minus

info()

info() 

IsValidSequence()

IsValidSequence(  $sequence) 

Parameters

$sequence

mbar_to_atm()

mbar_to_atm(  $atm) 

Parameters

$atm

mbar_to_inchHg()

mbar_to_inchHg(  $inchHg) 

Parameters

$inchHg

mbar_to_kPa()

mbar_to_kPa(  $kPa) 

Parameters

$kPa

mbar_to_mmHg()

mbar_to_mmHg(  $Hg) 

Parameters

$Hg

mbar_to_psi()

mbar_to_psi(  $psi) 

Parameters

$psi

mbar_to_Torr()

mbar_to_Torr(  $torr) 

Parameters

$torr

micro_to_pmol_dsDNA()

micro_to_pmol_dsDNA(  $pmol_dsDNA_sequence,   $no_of_micro_dsDNA) 

Parameters

$pmol_dsDNA_sequence
$no_of_micro_dsDNA

micro_to_pmol_ssDNA()

micro_to_pmol_ssDNA(  $pmol_ssDNA_sequence,   $no_of_micro_ssDNA) 

Parameters

$pmol_ssDNA_sequence
$no_of_micro_ssDNA

MW_of_dsDNA()

MW_of_dsDNA(  $sequence) 

Parameters

$sequence

MW_of_ssDNA()

MW_of_ssDNA(  $sequence) 

Parameters

$sequence

MW_of_ssRNA()

MW_of_ssRNA(  $sequence) 

Parameters

$sequence

pmol_of_dsDNA()

pmol_of_dsDNA(  $pmol_dsDNA_sequence,   $pmol_dsDNA_no_of_mueg) 

Parameters

$pmol_dsDNA_sequence
$pmol_dsDNA_no_of_mueg

pmol_of_ssDNA()

pmol_of_ssDNA(  $pmol_ssDNA_sequence,   $pmol_ssDNA_no_of_mueg) 

Parameters

$pmol_ssDNA_sequence
$pmol_ssDNA_no_of_mueg

pmol_of_ssRNA()

pmol_of_ssRNA(  $pmol_ssRNA_sequence,   $pmol_ssRNA_no_of_mueg) 

Parameters

$pmol_ssRNA_sequence
$pmol_ssRNA_no_of_mueg

pmol_to_micro_dsDNA()

pmol_to_micro_dsDNA(  $micro_dsDNA_sequence,   $no_of_pmol_dsDNA) 

Parameters

$micro_dsDNA_sequence
$no_of_pmol_dsDNA

pmol_to_micro_ssDNA()

pmol_to_micro_ssDNA(  $micro_ssDNA_sequence,   $no_of_pmol_ssDNA) 

Parameters

$micro_ssDNA_sequence
$no_of_pmol_ssDNA

pmol_to_micro_ssRNA()

pmol_to_micro_ssRNA(  $micro_ssRNA_sequence,   $no_of_pmol_ssRNA) 

Parameters

$micro_ssRNA_sequence
$no_of_pmol_ssRNA

print_form()

print_form(  $sequence) 

Parameters

$sequence

print_form()

print_form() 

randon_DNA()

randon_DNA(  $a,   $c,   $g,   $t) 

Parameters

$a
$c
$g
$t

randon_prot()

randon_prot(  $A,   $C,   $D,   $E,   $F,   $G,   $H,   $I,   $K,   $L,   $M,   $N,   $P,   $Q,   $R,   $S,   $T,   $V,   $W,   $Y) 

Parameters

$A
$C
$D
$E
$F
$G
$H
$I
$K
$L
$M
$N
$P
$Q
$R
$S
$T
$V
$W
$Y

reduce_enzymes_array()

reduce_enzymes_array(  $enzymes_array,   $minimun,   $retype,   $defined_sq,   $wre) 

Parameters

$enzymes_array
$minimun
$retype
$defined_sq
$wre

remove_non_coding()

remove_non_coding(  $seq) 

Parameters

$seq

remove_useless_from_DNA()

remove_useless_from_DNA(  $seq) 

Parameters

$seq

restriction_digest()

restriction_digest(  $enzymes_array,   $sequence) 

Parameters

$enzymes_array
$sequence

RevComp()

RevComp(  $seq) 

Parameters

$seq

RevComp_DNA2()

RevComp_DNA2(  $seq) 

Parameters

$seq

revpermin()

revpermin(  $rpm,   $RCF,   $R) 

Parameters

$rpm
$RCF
$R

show_vendors()

show_vendors(  $company,   $enzyme) 

Parameters

$company
$enzyme

toRNA()

toRNA(  $seq) 

Parameters

$seq